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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
8
snATAC-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
125
DNA binding
16
DNA accessibility
9
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
54
transcription factor
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
18
control
13
RNA binding protein
10
chromatin remodeller
Date released
45
May, 2019
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
1
January, 2018
Available data
138
bam
120
bigWig
109
bed narrowPeak
108
bigBed narrowPeak
63
fastq
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
158
Homo sapiens
Biosample type
61
cell line
60
tissue
37
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
8
T1D
Genome assembly (visualization)
121
hg19
113
GRCh38
Lab
150
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
organ_slims!
artery
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
cell line
GM12878
60
1
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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