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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
99
single cell RNA-seq
78
total RNA-seq
49
ATAC-seq
37
DNase-seq
10
WGBS
8
Hi-C
4
pCHi-C
2
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
182
DNA binding
Target of assay
130
histone
130
histone modification
82
broad histone mark
48
narrow histone mark
37
control
15
transcription factor
9
RNA binding protein
Date released
66
May, 2019
57
April, 2019
45
October, 2019
6
February, 2021
5
June, 2019
3
November, 2017
Available data
181
bam
143
bigWig
140
bed narrowPeak
130
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
Organism
182
Homo sapiens
Biosample type
151
tissue
25
primary cell
6
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
182
AMP
Genome assembly (visualization)
143
hg19
139
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
tissue
heart left ventricle
35
tibial artery
23
ascending aorta
16
thoracic aorta
16
heart
14
+ See 5 more…
primary cell
endothelial cell of umbilical vein
17
cardiac fibroblast
5
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
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