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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
62
total RNA-seq
51
ATAC-seq
43
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
142
DNA binding
95
DNA accessibility
68
Transcription
3
3D chromatin structure
Target of assay
101
histone
101
histone modification
65
broad histone mark
36
narrow histone mark
33
control
8
transcription factor
4
RNA binding protein
Date released
90
October, 2019
72
February, 2021
57
May, 2019
37
June, 2019
35
February, 2023
July, 2019
6
August, 2021
5
February, 2020
4
March, 2020
3
November, 2017
Available data
258
bam
209
bigWig
198
bed narrowPeak
143
bigBed narrowPeak
69
tsv
47
bed broadPeak
47
bigBed broadPeak
43
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
309
Homo sapiens
Biosample type
216
tissue
66
cell line
27
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
309
AMP
Genome assembly (visualization)
253
GRCh38
225
hg19
Lab
309
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
309 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
muscle of leg
7
13
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
See all biosamples
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