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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
3
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
86
DNA binding
12
Transcription
11
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
17
control
3
RNA binding protein
transcription factor
Date released
49
October, 2019
43
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
June, 2019
2
February, 2020
2
November, 2017
Available data
102
bam
84
bigWig
74
bed narrowPeak
71
bigBed narrowPeak
13
tsv
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
1
tar
Organism
117
Homo sapiens
Biosample type
89
tissue
28
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
85
hg19
78
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
transcription factor
organ_slims!
heart
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
2
1
ascending aorta
15
1
2
thoracic aorta
15
2
1
pulmonary artery
2
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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