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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
2
pCHi-C
1
WGBS
Assay category
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
4
March, 2020
3
February, 2020
2
February, 2021
1
July, 2019
Available data
159
bam
bigWig
73
bed narrowPeak
69
bigBed narrowPeak
69
tsv
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
29
tissue
7
primary cell
2
cell line
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
3
hg19
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
WGBS
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
5
2
cell line
smooth muscle cell of the coronary artery
2
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