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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
76
DNA binding
65
Transcription
51
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
RNA binding protein
Date released
66
February, 2021
47
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
150
bam
123
bigWig
109
bed narrowPeak
66
tsv
59
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
196
Homo sapiens
Biosample type
130
tissue
66
cell line
primary cell
Organ
719
liver
636
connective tissue
591
pancreas
484
adipose tissue
335
heart
317
kidney
265
brain
196
blood vessel
196
vasculature
158
bone element
138
artery
122
limb
115
epithelium
82
musculature of body
56
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
166
GRCh38
131
hg19
Lab
196
AMP-T2D consortium
target.investigated_as!
RNA binding protein
biosample_type!
primary cell
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
4
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
15
2
1
thoracic aorta
15
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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