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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
95
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
RNA binding protein
Date released
66
February, 2021
47
May, 2019
47
October, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
2
November, 2017
Available data
167
bam
136
bigWig
123
bed narrowPeak
75
bigBed narrowPeak
63
tsv
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
1
tar
Organism
215
Homo sapiens
Biosample type
123
tissue
66
cell line
26
primary cell
Organ
931
pancreas
723
liver
656
connective tissue
503
epithelium
474
adipose tissue
340
kidney
322
heart
265
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
175
GRCh38
146
hg19
Lab
215
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
RNA binding protein
month_released!
July, 2019
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
4
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
15
1
1
thoracic aorta
15
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
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