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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
56
total RNA-seq
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
94
DNA binding
58
Transcription
12
DNA accessibility
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
58
February, 2021
27
December, 2018
25
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
152
bam
137
bigWig
83
bed narrowPeak
79
bigBed narrowPeak
60
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
164
Homo sapiens
Biosample type
118
cell line
36
tissue
10
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
8
T1D
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
156
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
GM12878
60
smooth muscle cell of the coronary artery
6
52
tissue
tibial artery
23
1
2
coronary artery
5
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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