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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
612
ChIP-seq
189
total RNA-seq
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
612
DNA binding
193
Transcription
14
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
68
November, 2018
63
December, 2017
53
August, 2017
35
August, 2021
28
December, 2018
23
January, 2019
20
May, 2022
10
July, 2019
8
January, 2021
6
October, 2019
5
December, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
February, 2020
Available data
738
bam
655
bigWig
524
fastq
472
bed narrowPeak
411
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
836
Homo sapiens
Biosample type
460
cell line
340
tissue
21
primary cell
15
in vitro differentiated cells
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
828
AMP
8
T1D
Genome assembly (visualization)
656
hg19
582
GRCh38
Lab
777
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
836 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
GM12878
60
tissue
liver
145
167
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
primary cell
hepatocyte
4
5
1
1
peripheral blood mononuclear cell
8
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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