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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
8
snATAC-seq
5
total RNA-seq
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
10
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
41
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
Available data
101
bam
84
bigWig
80
bed narrowPeak
80
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
110
Homo sapiens
Biosample type
60
cell line
42
tissue
8
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
8
T1D
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
102
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
snATAC-seq
total RNA-seq
DNase-seq
cell line
GM12878
60
tissue
tibial nerve
35
5
2
primary cell
peripheral blood mononuclear cell
8
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