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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
ATAC-seq
1
RRBS
1
total RNA-seq
Assay category
60
DNA binding
8
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
2
July, 2019
Available data
61
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
70
Homo sapiens
Biosample type
60
cell line
9
primary cell
1
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
56
hg19
55
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
snATAC-seq
RRBS
total RNA-seq
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
tissue
pericardium
1
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