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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
18
DNA binding
9
DNA accessibility
6
3D chromatin structure
5
DNA methylation
3
Transcription
Target of assay
12
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
8
January, 2021
5
July, 2019
3
January, 2019
3
March, 2020
3
November, 2018
2
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
117
bam
114
bed narrowPeak
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
42
Homo sapiens
Biosample type
25
tissue
11
primary cell
6
cell line
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
8
T1D
Genome assembly (visualization)
6
hg19
Lab
34
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
snATAC-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
4
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
cell line
GM12878
6
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