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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
97
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
68
transcription factor
25
control
15
RNA binding protein
10
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
23
October, 2018
18
August, 2017
18
January, 2019
16
November, 2018
1
August, 2018
1
October, 2017
Available data
502
bam
480
bigWig
401
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
104
Homo sapiens
Biosample type
60
cell line
43
tissue
1
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
104
AMP
Genome assembly (visualization)
77
GRCh38
75
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
60
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
in vitro differentiated cells
white fat cell
1
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