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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
56
total RNA-seq
46
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
73
DNA binding
58
Transcription
50
DNA accessibility
Target of assay
56
transcription factor
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
27
December, 2018
17
January, 2019
15
November, 2018
8
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
141
bam
119
bigWig
107
bed narrowPeak
59
fastq
58
bigBed narrowPeak
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
181
Homo sapiens
Biosample type
126
cell line
53
tissue
2
primary cell
Organ
744
pancreas
689
liver
605
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
158
bone element
121
artery
99
brain
73
limb
63
musculature of body
60
blood
60
bodily fluid
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
161
GRCh38
127
hg19
Lab
181
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
tissue
coronary artery
3
1
36
2
tibial artery
5
1
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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