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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
42
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
26
transcription factor
9
control
8
RNA binding protein
8
chromatin remodeller
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
Date released
December, 2018
18
January, 2019
15
November, 2018
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
56
bam
49
bigWig
47
fastq
33
bed narrowPeak
27
bigBed narrowPeak
14
tsv
Organism
66
Homo sapiens
Biosample type
42
cell line
16
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
727
liver
684
connective tissue
505
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
24
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
8
T1D
Genome assembly (visualization)
48
hg19
47
GRCh38
1
hg18
Lab
58
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
month_released!
December, 2018
December, 2017
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
33
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
9
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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