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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
59
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
37
transcription factor
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
control
4
RNA binding protein
4
chromatin remodeller
Date released
27
December, 2018
21
October, 2019
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
62
bam
55
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
42
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
73
Homo sapiens
Biosample type
43
cell line
30
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
8
T1D
Genome assembly (visualization)
57
hg19
51
GRCh38
Lab
65
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
month_released!
January, 2019
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
42
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
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