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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
53
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
37
transcription factor
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
5
control
4
RNA binding protein
4
chromatin remodeller
Date released
27
December, 2018
January, 2019
15
November, 2018
15
October, 2019
8
January, 2021
1
January, 2018
1
March, 2020
Available data
56
bam
50
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
42
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
67
Homo sapiens
Biosample type
43
cell line
24
primary cell
Organ
873
pancreas
726
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
58
eye
51
blood
51
bodily fluid
35
nerve
29
embryo
20
lung
18
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
8
T1D
Genome assembly (visualization)
52
hg19
46
GRCh38
Lab
59
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
month_released!
January, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
42
1
primary cell
endothelial cell of umbilical vein
11
2
2
1
peripheral blood mononuclear cell
8
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