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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
59
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
59
bam
59
fastq
54
bigWig
53
bed narrowPeak
53
bigBed narrowPeak
1
tsv
Organism
69
Homo sapiens
Biosample type
60
cell line
8
primary cell
1
tissue
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
organ_slims!
bone element
target.investigated_as!
histone
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
tissue
bladder (urinary bladder)
1
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