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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
13
ATAC-seq
8
snATAC-seq
6
ChIP-seq
1
pCHi-C
Assay category
62
Transcription
21
DNA accessibility
6
DNA binding
Target of assay
6
control
Date released
150
February, 2021
8
February, 2023
8
January, 2021
3
January, 2019
3
November, 2018
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
88
txt
62
bed narrowPeak
60
fastq
58
tsv
bigBed narrowPeak
4
bed bed3
Organism
174
Homo sapiens
Biosample type
158
tissue
9
primary cell
7
cell line
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
9
T1D
Genome assembly (visualization)
71
hg19
66
GRCh38
Lab
165
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
spinal cord
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
174 results
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Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
cell line
GM12878
1
6
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