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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
32
DNase-seq
8
snATAC-seq
5
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
278
DNA binding
46
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
188
histone
188
histone modification
118
narrow histone mark
70
broad histone mark
54
transcription factor
34
control
13
RNA binding protein
10
chromatin remodeller
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
27
December, 2018
18
January, 2019
17
November, 2018
16
October, 2017
8
January, 2021
7
July, 2019
2
March, 2020
1
February, 2023
1
January, 2018
Available data
291
bam
265
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
331
Homo sapiens
Biosample type
244
tissue
61
cell line
26
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
323
AMP
8
T1D
Genome assembly (visualization)
259
GRCh38
207
hg19
Lab
323
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 1 more…
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