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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
32
DNase-seq
17
total RNA-seq
snATAC-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
278
DNA binding
38
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
188
histone
188
histone modification
118
narrow histone mark
70
broad histone mark
54
transcription factor
37
control
13
RNA binding protein
10
chromatin remodeller
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
27
December, 2018
18
January, 2019
18
July, 2019
17
November, 2018
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
1
January, 2018
Available data
303
bam
277
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
347
Homo sapiens
Biosample type
265
tissue
61
cell line
21
primary cell
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
353
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
347
AMP
Genome assembly (visualization)
271
GRCh38
219
hg19
Lab
347
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
cell line
GM12878
60
1
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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