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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
76
ATAC-seq
68
DNase-seq
59
single cell RNA-seq
53
total RNA-seq
14
snATAC-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
159
DNA accessibility
113
Transcription
97
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
59
transcription factor
21
histone
21
histone modification
15
control
11
RNA binding protein
11
narrow histone mark
10
broad histone mark
10
chromatin remodeller
7
recombinant protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
27
December, 2018
23
April, 2019
18
January, 2019
17
October, 2019
15
November, 2018
14
May, 2023
February, 2021
8
January, 2021
4
July, 2019
2
December, 2019
2
March, 2020
1
January, 2018
Available data
214
bed narrowPeak
171
bam
156
bigWig
141
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
60
fastq
57
txt
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
376
Homo sapiens
Biosample type
290
tissue
78
cell line
8
primary cell
Organ
914
pancreas
788
liver
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
321
AMP
47
KPMP
8
T1D
Genome assembly (visualization)
229
GRCh38
157
hg19
Lab
177
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
8
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
audit script error
1
inconsistent control
month_released!
February, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
27
75
13
59
49
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 6 more…
cell line
GM12878
60
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
+ See 1 more…
primary cell
peripheral blood mononuclear cell
8
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