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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
total RNA-seq
100
ChIP-seq
81
ATAC-seq
70
DNase-seq
64
single cell RNA-seq
6
WGBS
6
snATAC-seq
3
RNA microarray
3
small RNA-seq
3
snDrop-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
514
Transcription
158
DNA accessibility
100
DNA binding
7
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
30
broad histone mark
30
control
22
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
394
February, 2021
129
August, 2021
69
June, 2019
57
August, 2017
47
September, 2023
23
April, 2019
23
October, 2018
15
May, 2023
14
July, 2019
5
October, 2019
3
December, 2019
2
February, 2020
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
538
bam
514
bigWig
411
tsv
166
bed narrowPeak
97
bigBed narrowPeak
74
bed bed3+
71
bed broadPeak
70
bigBed broadPeak
64
xls
62
txt
43
fastq
8
tagAlign
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
786
Homo sapiens
Biosample type
787
tissue
80
cell line
46
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
bodily fluid
Project
740
AMP
47
KPMP
Genome assembly (visualization)
587
GRCh38
516
hg19
Lab
598
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
787 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
RNA microarray
small RNA-seq
snDrop-seq
FAIRE-seq
Hi-C
RRBS
pCHi-C
tissue
adipose tissue
382
2
3
3
1
kidney
49
27
75
13
64
6
1
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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