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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
177
DNA binding
25
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
118
histone
118
histone modification
93
narrow histone mark
54
transcription factor
25
broad histone mark
13
RNA binding protein
10
chromatin remodeller
6
control
Date released
78
October, 2019
27
December, 2018
25
May, 2019
20
June, 2019
17
July, 2019
15
January, 2019
15
November, 2017
14
November, 2018
6
October, 2017
1
February, 2023
1
January, 2018
Available data
214
bigWig
209
bam
195
bed narrowPeak
119
bigBed narrowPeak
71
fastq
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
219
Homo sapiens
Biosample type
143
tissue
55
cell line
21
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
0
large intestine
Project
219
AMP
Genome assembly (visualization)
271
GRCh38
219
hg19
Lab
219
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
cell line
GM12878
54
1
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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