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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
56
total RNA-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
94
DNA binding
DNA accessibility
58
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
58
February, 2021
27
December, 2018
23
October, 2019
18
January, 2019
15
November, 2018
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
1
March, 2020
Available data
148
bam
133
bigWig
79
bed narrowPeak
75
bigBed narrowPeak
60
fastq
59
tsv
6
tagAlign
Organism
153
Homo sapiens
Biosample type
118
cell line
33
tissue
2
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
133
GRCh38
133
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
cell line
GM12878
60
smooth muscle cell of the coronary artery
6
52
tissue
tibial artery
23
1
coronary artery
5
1
pulmonary artery
2
sigmoid colon
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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