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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
54
total RNA-seq
45
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
94
DNA binding
57
DNA accessibility
56
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
1
March, 2020
Available data
159
bam
137
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
60
fastq
57
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
208
Homo sapiens
Biosample type
127
cell line
73
tissue
8
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
200
AMP
8
T1D
Genome assembly (visualization)
179
GRCh38
145
hg19
Lab
200
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
July, 2019
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
pulmonary artery
2
sigmoid colon
1
primary cell
peripheral blood mononuclear cell
8
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