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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
30
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
66
DNA binding
42
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
5
histone
5
histone modification
5
narrow histone mark
Date released
31
February, 2023
27
December, 2018
23
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
88
bed narrowPeak
68
bam
62
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
132
Homo sapiens
Biosample type
61
cell line
58
tissue
13
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
8
T1D
Genome assembly (visualization)
90
hg19
61
GRCh38
Lab
124
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
pituitary gland
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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