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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
15
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
3
ATAC-seq
1
RRBS
Assay category
66
DNA binding
15
DNA accessibility
15
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
5
histone
5
histone modification
5
narrow histone mark
Date released
February, 2023
27
December, 2018
23
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
68
bam
62
bigWig
61
bed narrowPeak
60
bigBed narrowPeak
60
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
1
tsv
Organism
101
Homo sapiens
Biosample type
61
cell line
27
tissue
13
primary cell
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
8
T1D
Genome assembly (visualization)
63
hg19
61
GRCh38
Lab
93
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
February, 2023
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
14
4
2
retina
1
3
pituitary gland
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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