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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
ATAC-seq
WGBS
1
DNase-seq
1
pCHi-C
Assay category
80
DNA binding
11
DNA accessibility
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
22
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
82
bam
82
fastq
69
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
92
Homo sapiens
Biosample type
61
cell line
23
tissue
8
primary cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
354
kidney
345
heart
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
8
T1D
Genome assembly (visualization)
69
hg19
68
GRCh38
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
WGBS
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
60
1
tissue
spleen
20
1
1
1
primary cell
peripheral blood mononuclear cell
8
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