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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
36
DNA accessibility
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
1
January, 2018
1
October, 2019
Available data
bam
210
bigWig
187
bed narrowPeak
137
bigBed narrowPeak
68
tsv
66
fastq
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
52
Homo sapiens
Biosample type
46
tissue
5
primary cell
1
cell line
Organ
142
heart
92
bone element
86
connective tissue
61
pancreas
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
49
epithelium
43
brain
39
artery
39
liver
39
musculature of body
19
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
35
GRCh38
7
hg19
Lab
52
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
GM12878
1
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