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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
14
total RNA-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
GRO-seq
Assay category
99
DNA binding
14
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
54
transcription factor
28
histone
28
histone modification
15
control
15
narrow histone mark
13
broad histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
1
March, 2020
Available data
116
bam
99
bigWig
87
fastq
81
bed narrowPeak
67
bigBed narrowPeak
14
tsv
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
128
Homo sapiens
Biosample type
69
cell line
30
primary cell
29
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
8
T1D
Genome assembly (visualization)
101
hg19
95
GRCh38
1
hg18
Lab
120
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
GRO-seq
cell line
GM12878
60
1
H1-hESC
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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