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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
81
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
20
histone
20
histone modification
11
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
Date released
27
December, 2018
25
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
2
March, 2020
1
January, 2018
Available data
80
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
60
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
96
Homo sapiens
Biosample type
61
cell line
30
primary cell
5
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
8
T1D
Genome assembly (visualization)
72
hg19
66
GRCh38
Lab
88
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
4
ovary
1
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