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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
83
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
26
October, 2019
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
151
bam
129
bigWig
117
bed narrowPeak
68
bigBed narrowPeak
58
tsv
50
fastq
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
199
Homo sapiens
Biosample type
117
cell line
72
tissue
10
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
351
kidney
347
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
191
AMP
8
T1D
Genome assembly (visualization)
171
GRCh38
137
hg19
Lab
191
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
50
1
tissue
coronary artery
4
1
36
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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