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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
50
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
19
April, 2020
13
November, 2018
12
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
Available data
50
bam
50
fastq
45
bigWig
44
bed narrowPeak
44
bigBed narrowPeak
1
tsv
Organism
78
Homo sapiens
Biosample type
51
cell line
20
tissue
8
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
351
kidney
347
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
52
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
50
1
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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