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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
59
ChIP-seq
12
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
20
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
150
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
January, 2018
1
May, 2021
Available data
125
bam
111
bigWig
88
txt
61
bed narrowPeak
59
fastq
58
tsv
53
bigBed narrowPeak
4
bed bed3
Organism
226
Homo sapiens
Biosample type
158
tissue
59
cell line
9
primary cell
Organ
873
pancreas
731
liver
650
connective tissue
478
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
82
musculature of body
67
blood
67
bodily fluid
58
eye
35
nerve
28
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
217
AMP
9
T1D
Genome assembly (visualization)
123
hg19
119
GRCh38
Lab
217
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
target.investigated_as!
narrow histone mark
month_released!
January, 2018
BIOSAMPLE
ASSAY
226 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
59
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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