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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
73
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
10
February, 2018
8
August, 2021
8
December, 2017
8
January, 2021
2
January, 2018
2
May, 2021
Available data
87
bam
78
fastq
76
bigWig
60
bed narrowPeak
53
bigBed narrowPeak
14
tsv
2
bed bed3+
Organism
97
Homo sapiens
Biosample type
68
cell line
21
in vitro differentiated cells
8
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
8
T1D
Genome assembly (visualization)
76
hg19
75
GRCh38
1
hg18
Lab
89
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
59
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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