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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
110
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
56
October, 2019
32
June, 2019
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
1
January, 2018
Available data
159
bam
131
bed narrowPeak
131
bigWig
123
bigBed narrowPeak
59
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
175
Homo sapiens
Biosample type
107
tissue
60
cell line
8
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
8
T1D
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
167
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
27
2
1
5
tibial artery
19
2
1
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 8 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
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