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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
44
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
February, 2020
1
January, 2018
Available data
51
bam
35
bigWig
30
bed narrowPeak
29
bigBed narrowPeak
9
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
43
tissue
10
cell line
8
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
8
T1D
Genome assembly (visualization)
35
hg19
34
GRCh38
Lab
53
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
tibial nerve
35
5
1
2
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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