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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
22
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
22
DNA binding
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
142
February, 2021
13
December, 2017
13
February, 2018
8
August, 2021
4
February, 2023
3
May, 2021
1
January, 2018
Available data
94
bam
88
txt
87
bigWig
72
tsv
27
fastq
14
bed narrowPeak
3
bed bed3+
Organism
184
Homo sapiens
Biosample type
146
tissue
29
in vitro differentiated cells
8
cell line
1
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
1
T1D
Genome assembly (visualization)
87
GRCh38
87
hg19
1
hg18
Lab
183
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
184 results
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RNA microarray
total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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