Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
36
ChIP-seq
7
ATAC-seq
7
total RNA-seq
4
WGBS
4
pCHi-C
Assay category
36
DNA binding
7
DNA accessibility
7
Transcription
4
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
84
February, 2021
40
August, 2017
9
February, 2023
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2021
1
May, 2023
1
October, 2019
Available data
bam
483
bigWig
460
tsv
88
txt
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
142
Homo sapiens
Biosample type
141
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
AMP
1
T1D
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
142
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
143 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
bone element
84
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 5 more…
in vitro differentiated cells
white fat cell
1
primary cell
megakaryocyte
1
See all biosamples
Download