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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
217
total RNA-seq
5
DNase-seq
3
small RNA-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
418
DNA binding
220
Transcription
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
322
transcription factor
81
recombinant protein
80
histone modification
79
histone
55
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
58
February, 2021
52
November, 2018
50
December, 2017
18
August, 2017
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
747
bam
646
bigWig
465
fastq
415
bed narrowPeak
358
bigBed narrowPeak
223
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
646
Homo sapiens
Biosample type
318
cell line
303
tissue
14
in vitro differentiated cells
11
primary cell
Organ
612
pancreas
588
liver
568
connective tissue
425
adipose tissue
291
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
646
AMP
Genome assembly (visualization)
641
hg19
586
GRCh38
Lab
646
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
646 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
312
5
1
tissue
liver
82
147
2
1
bone tissue
58
right lobe of liver
7
2
1
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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