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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
3
ChIP-seq
2
DNase-seq
1
RRBS
1
pCHi-C
Assay category
62
Transcription
14
DNA accessibility
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
150
February, 2021
8
February, 2023
3
November, 2017
2
June, 2019
1
July, 2019
1
May, 2021
Available data
88
txt
71
bam
63
bigWig
58
tsv
12
bed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
3
fastq
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
165
Homo sapiens
Biosample type
158
tissue
7
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
1
T1D
Genome assembly (visualization)
76
hg19
70
GRCh38
Lab
164
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
165 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
RRBS
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
primary cell
choroid plexus epithelial cell
3
1
1
megakaryocyte
1
smooth muscle cell of the brain vasculature
1
See all biosamples
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