Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
81
Transcription
44
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
73
bam
64
bigWig
63
tsv
41
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
220
Homo sapiens
Biosample type
214
tissue
6
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
219
AMP
1
T1D
Genome assembly (visualization)
104
hg19
72
GRCh38
Lab
219
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
heart
pituitary gland
BIOSAMPLE
ASSAY
220 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
3
15
3
pigmented layer of retina
2
12
+ See 12 more…
primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
See all biosamples
Download