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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
81
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
142
February, 2021
20
October, 2019
8
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
65
bam
64
bigWig
63
tsv
6
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
180
Homo sapiens
Biosample type
174
tissue
6
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
1
T1D
Genome assembly (visualization)
65
hg19
64
GRCh38
Lab
179
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
intestine
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
180 results
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RNA microarray
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
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