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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
60
ChIP-seq
58
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
60
DNA binding
58
Transcription
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
142
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
May, 2021
Available data
118
bam
113
bigWig
84
txt
60
fastq
58
tsv
54
bed narrowPeak
54
bigBed narrowPeak
Organism
212
Homo sapiens
Biosample type
142
tissue
61
cell line
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
203
AMP
9
T1D
Genome assembly (visualization)
113
hg19
112
GRCh38
Lab
203
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
organ_slims!
skeleton
BIOSAMPLE
ASSAY
212 results
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RNA microarray
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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