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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
85
RNA microarray
73
ChIP-seq
18
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
461
Transcription
73
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
506
bam
481
bigWig
457
tsv
88
txt
43
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
645
Homo sapiens
Biosample type
646
tissue
3
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
646
AMP
Genome assembly (visualization)
494
hg19
488
GRCh38
Lab
646
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
646 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
1
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