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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
67
ChIP-seq
16
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
Assay category
463
Transcription
67
DNA binding
16
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
536
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2019
1
October, 2017
Available data
508
bam
483
bigWig
459
tsv
88
txt
44
fastq
21
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
639
Homo sapiens
Biosample type
636
tissue
3
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
639
AMP
1
T1D
Genome assembly (visualization)
486
hg19
481
GRCh38
Lab
639
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
640 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
tissue
adipose tissue
382
1
2
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
10
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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