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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
18
snATAC-seq
13
ATAC-seq
9
single cell RNA-seq
2
pCHi-C
Assay category
71
Transcription
60
DNA binding
31
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
March, 2020
1
May, 2021
Available data
126
bam
113
bigWig
88
txt
62
bed narrowPeak
60
fastq
59
tsv
54
bigBed narrowPeak
4
bed bed3
Organism
247
Homo sapiens
Biosample type
178
tissue
61
cell line
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
220
AMP
19
LungMap
9
T1D
Genome assembly (visualization)
125
hg19
120
GRCh38
Lab
220
AMP-T2D consortium
19
Xin Sun, UCSD
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
248 results
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RNA microarray
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
lung
10
9
1
acetabular part of hip bone
1
1
ilium
1
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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