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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
84
RNA microarray
total RNA-seq
50
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
93
DNA binding
60
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
92
February, 2021
50
May, 2019
47
October, 2019
39
February, 2023
6
August, 2021
6
July, 2019
5
June, 2019
3
March, 2020
3
November, 2017
1
May, 2021
Available data
125
bed narrowPeak
116
bam
88
bigWig
84
txt
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
252
Homo sapiens
Biosample type
222
tissue
30
primary cell
cell line
Organ
484
pancreas
348
epithelium
307
heart
279
kidney
269
brain
215
liver
210
connective tissue
161
vasculature
155
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
71
artery
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
251
AMP
1
T1D
Genome assembly (visualization)
125
GRCh38
101
hg19
Lab
251
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
bone element
84
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
+ See 14 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
megakaryocyte
1
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