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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
122
ChIP-seq
84
RNA microarray
59
ATAC-seq
39
DNase-seq
6
single cell RNA-seq
5
Hi-C
3
WGBS
1
pCHi-C
Assay category
133
Transcription
122
DNA binding
98
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Target of assay
85
histone
85
histone modification
56
broad histone mark
30
control
29
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
216
February, 2021
69
October, 2019
57
May, 2019
43
February, 2023
35
June, 2019
12
July, 2019
6
August, 2021
5
February, 2020
3
March, 2020
Available data
301
bam
254
bigWig
185
bed narrowPeak
130
tsv
126
bigBed narrowPeak
88
txt
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
6
tagAlign
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
446
Homo sapiens
Biosample type
380
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
304
GRCh38
273
hg19
Lab
446
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
36
2
tibial nerve
5
35
1
2
tibial artery
1
23
1
2
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cell line
smooth muscle cell of the coronary artery
52
6
8
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